Recently had a customer where the PC would install windows via MDT but Litetouch would never appear to install the applications
A closer look and we deployed a new AV Sentinelone which did not like the LTIBootstrap.vbs script
I changed the deployment of SentinelOne to after MDT had finished and it fixed it
You might need to disable it from Deploying it to GPO as well
Also check the the bootstrap file was missing from the MDT share